.gitlab-ci.yml
LICENSE
README.md
requirements.txt
setup.py
table_of_adsorption_sites.pdf
acat/.gitkeep
acat/__init__.py
acat/adsorbate_coverage.py
acat/adsorption_sites.py
acat/labels.py
acat/settings.py
acat/utilities.py
acat.egg-info/PKG-INFO
acat.egg-info/SOURCES.txt
acat.egg-info/dependency_links.txt
acat.egg-info/requires.txt
acat.egg-info/top_level.txt
acat/build/.gitkeep
acat/build/__init__.py
acat/build/action.py
acat/build/ordering.py
acat/build/overlayer.py
acat/ga/.gitkeep
acat/ga/__init__.py
acat/ga/adsorbate_comparators.py
acat/ga/adsorbate_operators.py
acat/ga/group_comparators.py
acat/ga/group_operators.py
acat/ga/particle_crossovers.py
acat/ga/particle_mutations.py
docs/.gitkeep
docs/Makefile
docs/acat_favicon.ico
docs/build.rst
docs/conf.py
docs/ga.rst
docs/index.rst
docs/installation.rst
docs/make.bat
docs/modules.rst
docs/notes.rst
docs/utilities.rst
docs/_build/doctrees/build.doctree
docs/_build/doctrees/environment.pickle
docs/_build/doctrees/ga.doctree
docs/_build/doctrees/index.doctree
docs/_build/doctrees/installation.doctree
docs/_build/doctrees/modules.doctree
docs/_build/doctrees/notes.doctree
docs/_build/doctrees/utilities.doctree
docs/_build/html/.buildinfo
docs/_build/html/build.html
docs/_build/html/ga.html
docs/_build/html/genindex.html
docs/_build/html/index.html
docs/_build/html/installation.html
docs/_build/html/modules.html
docs/_build/html/notes.html
docs/_build/html/objects.inv
docs/_build/html/py-modindex.html
docs/_build/html/search.html
docs/_build/html/searchindex.js
docs/_build/html/sitemap.xml
docs/_build/html/utilities.html
docs/_build/html/_downloads/2323b5636c7c7624f7124ca37b2d01b9/table_of_adsorption_sites.pdf
docs/_build/html/_downloads/d4db2def8832c660c65d58623887badd/water_bulk.xyz
docs/_build/html/_images/OrderedSlabOrderingGenerator1.gif
docs/_build/html/_images/OrderedSlabOrderingGenerator2.gif
docs/_build/html/_images/OrderedSlabOrderingGenerator3.gif
docs/_build/html/_images/RandomOrderingGenerator1.gif
docs/_build/html/_images/RandomOrderingGenerator2.gif
docs/_build/html/_images/StochasticPatternGenerator1.gif
docs/_build/html/_images/StochasticPatternGenerator2.gif
docs/_build/html/_images/StochasticPatternGenerator3.gif
docs/_build/html/_images/SymmetricClusterOrderingGenerator1.gif
docs/_build/html/_images/SymmetricClusterOrderingGenerator2.gif
docs/_build/html/_images/SymmetricClusterOrderingGenerator3.gif
docs/_build/html/_images/SymmetricClusterOrderingGenerator4.gif
docs/_build/html/_images/SystematicPatternGenerator1.gif
docs/_build/html/_images/SystematicPatternGenerator2.gif
docs/_build/html/_images/add_adsorbate.png
docs/_build/html/_images/add_adsorbate_to_label.png
docs/_build/html/_images/add_adsorbate_to_site_1.png
docs/_build/html/_images/add_adsorbate_to_site_2.png
docs/_build/html/_images/all_ordered_coverage_patterns.png
docs/_build/html/_images/color_facets.png
docs/_build/html/_images/full_coverage_pattern_1.png
docs/_build/html/_images/full_coverage_pattern_2.png
docs/_build/html/_images/ordered_coverage_pattern_1.png
docs/_build/html/_images/ordered_coverage_pattern_2.png
docs/_build/html/_images/random_coverage_pattern_1.png
docs/_build/html/_images/random_coverage_pattern_2.png
docs/_build/html/_images/random_coverage_pattern_3.png
docs/_build/html/_images/remove_adsorbate_from_site.png
docs/_build/html/_images/remove_adsorbates_from_sites.png
docs/_build/html/_images/remove_adsorbates_too_close.png
docs/_build/html/_images/unique_sites.png
docs/_build/html/_modules/index.html
docs/_build/html/_modules/acat/adsorbate_coverage.html
docs/_build/html/_modules/acat/adsorption_sites.html
docs/_build/html/_modules/acat/utilities.html
docs/_build/html/_modules/acat/build/action.html
docs/_build/html/_modules/acat/build/ordering.html
docs/_build/html/_modules/acat/build/overlayer.html
docs/_build/html/_modules/acat/ga/adsorbate_comparators.html
docs/_build/html/_modules/acat/ga/adsorbate_operators.html
docs/_build/html/_modules/acat/ga/group_comparators.html
docs/_build/html/_modules/acat/ga/group_operators.html
docs/_build/html/_sources/build.rst.txt
docs/_build/html/_sources/ga.rst.txt
docs/_build/html/_sources/index.rst.txt
docs/_build/html/_sources/installation.rst.txt
docs/_build/html/_sources/modules.rst.txt
docs/_build/html/_sources/notes.rst.txt
docs/_build/html/_sources/utilities.rst.txt
docs/_build/html/_static/acat_favicon.ico
docs/_build/html/_static/basic.css
docs/_build/html/_static/doctools.js
docs/_build/html/_static/documentation_options.js
docs/_build/html/_static/file.png
docs/_build/html/_static/graphviz.css
docs/_build/html/_static/jquery-3.5.1.js
docs/_build/html/_static/jquery.js
docs/_build/html/_static/language_data.js
docs/_build/html/_static/minus.png
docs/_build/html/_static/plus.png
docs/_build/html/_static/pygments.css
docs/_build/html/_static/searchtools.js
docs/_build/html/_static/table_styling.css
docs/_build/html/_static/underscore-1.3.1.js
docs/_build/html/_static/underscore.js
docs/_build/html/_static/css/badge_only.css
docs/_build/html/_static/css/theme.css
docs/_build/html/_static/css/fonts/Roboto-Slab-Bold.woff
docs/_build/html/_static/css/fonts/Roboto-Slab-Bold.woff2
docs/_build/html/_static/css/fonts/Roboto-Slab-Regular.woff
docs/_build/html/_static/css/fonts/Roboto-Slab-Regular.woff2
docs/_build/html/_static/css/fonts/fontawesome-webfont.eot
docs/_build/html/_static/css/fonts/fontawesome-webfont.svg
docs/_build/html/_static/css/fonts/fontawesome-webfont.ttf
docs/_build/html/_static/css/fonts/fontawesome-webfont.woff
docs/_build/html/_static/css/fonts/fontawesome-webfont.woff2
docs/_build/html/_static/css/fonts/lato-bold-italic.woff
docs/_build/html/_static/css/fonts/lato-bold-italic.woff2
docs/_build/html/_static/css/fonts/lato-bold.woff
docs/_build/html/_static/css/fonts/lato-bold.woff2
docs/_build/html/_static/css/fonts/lato-normal-italic.woff
docs/_build/html/_static/css/fonts/lato-normal-italic.woff2
docs/_build/html/_static/css/fonts/lato-normal.woff
docs/_build/html/_static/css/fonts/lato-normal.woff2
docs/_build/html/_static/js/badge_only.js
docs/_build/html/_static/js/html5shiv-printshiv.min.js
docs/_build/html/_static/js/html5shiv.min.js
docs/_build/html/_static/js/theme.js
docs/latex/LICRcyr2utf8.xdy
docs/latex/LICRlatin2utf8.xdy
docs/latex/LatinRules.xdy
docs/latex/Makefile
docs/latex/RandomOrderingGenerator.gif
docs/latex/StochasticPatternGenerator.gif
docs/latex/SymmetricOrderingGenerator.gif
docs/latex/SystematicPatternGenerator.gif
docs/latex/acat.log
docs/latex/acat.tex
docs/latex/add_adsorbate.png
docs/latex/add_adsorbate_to_label.png
docs/latex/add_adsorbate_to_site_1.png
docs/latex/add_adsorbate_to_site_2.png
docs/latex/all_coverage_patterns.png
docs/latex/color_facets.png
docs/latex/footnotehyper-sphinx.sty
docs/latex/full_coverage_pattern_1.png
docs/latex/full_coverage_pattern_2.png
docs/latex/latexmkjarc
docs/latex/latexmkrc
docs/latex/make.bat
docs/latex/python.ist
docs/latex/random_coverage_pattern_1.png
docs/latex/random_coverage_pattern_2.png
docs/latex/remove_adsorbate_from_site.png
docs/latex/remove_adsorbates_from_sites.png
docs/latex/remove_adsorbates_too_close.png
docs/latex/sphinx.sty
docs/latex/sphinx.xdy
docs/latex/sphinxcyrillic.sty
docs/latex/sphinxhighlight.sty
docs/latex/sphinxhowto.cls
docs/latex/sphinxmanual.cls
docs/latex/sphinxmessages.sty
docs/latex/sphinxmulticell.sty
docs/latex/symmetric_coverage_pattern_1.png
docs/latex/symmetric_coverage_pattern_2.png
docs/latex/unique_sites.png
docs/latex/.doctrees/build.doctree
docs/latex/.doctrees/environment.pickle
docs/latex/.doctrees/ga.doctree
docs/latex/.doctrees/index.doctree
docs/latex/.doctrees/installation.doctree
docs/latex/.doctrees/modules.doctree
docs/latex/.doctrees/notes.doctree
docs/latex/.doctrees/utilities.doctree
examples/.gitkeep
examples/prepare_sites.py
images/.gitkeep
images/OrderedSlabOrderingGenerator1.gif
images/OrderedSlabOrderingGenerator2.gif
images/OrderedSlabOrderingGenerator3.gif
images/RandomOrderingGenerator1.gif
images/RandomOrderingGenerator2.gif
images/StochasticPatternGenerator1.gif
images/StochasticPatternGenerator2.gif
images/StochasticPatternGenerator3.gif
images/SymmetricClusterOrderingGenerator1.gif
images/SymmetricClusterOrderingGenerator2.gif
images/SymmetricClusterOrderingGenerator3.gif
images/SymmetricClusterOrderingGenerator4.gif
images/SystematicPatternGenerator1.gif
images/SystematicPatternGenerator2.gif
images/add_adsorbate.png
images/add_adsorbate_to_label.png
images/add_adsorbate_to_site_1.png
images/add_adsorbate_to_site_2.png
images/all_ordered_coverage_patterns.png
images/bike_logo.png
images/color_facets.png
images/eu_logo.png
images/fcc111_0.75ml.png
images/full_coverage_pattern_1.png
images/full_coverage_pattern_2.png
images/full_sites_enumeration.png
images/labeled_sites.png
images/ordered_coverage_pattern_1.png
images/ordered_coverage_pattern_2.png
images/random_NiPt_111_surface_with_OH.png
images/random_coverage_pattern_1.png
images/random_coverage_pattern_2.png
images/random_coverage_pattern_3.png
images/random_cuboctahedron_NiPt_309_with_random_O_coverage.png
images/random_icosahedron_NiPt_309_with_OH.png
images/remove_adsorbate_from_site.png
images/remove_adsorbates_from_sites.png
images/remove_adsorbates_too_close.png
images/tagged_sites.png
images/unique_sites.png
tests/water_bulk.xyz