MANIFEST.in
README.md
requirements.txt
setup.py
acellera_htmd.egg-info/PKG-INFO
acellera_htmd.egg-info/SOURCES.txt
acellera_htmd.egg-info/dependency_links.txt
acellera_htmd.egg-info/entry_points.txt
acellera_htmd.egg-info/not-zip-safe
acellera_htmd.egg-info/requires.txt
acellera_htmd.egg-info/top_level.txt
htmd/__init__.py
htmd/config.py
htmd/decorators.py
htmd/dock.py
htmd/home.py
htmd/kinetics.py
htmd/kineticshmm.py
htmd/latest.py
htmd/metricdata.py
htmd/model.py
htmd/modelhmm.py
htmd/mutualinformation.py
htmd/numbautil.py
htmd/parallelprogress.py
htmd/pathplanning.py
htmd/session.py
htmd/simlist.py
htmd/ui.py
htmd/units.py
htmd/util.py
htmd/version.py
htmd/versionwarnings.py
htmd/adaptive/__init__.py
htmd/adaptive/adaptive.py
htmd/adaptive/adaptivebandit.py
htmd/adaptive/adaptivegoal.py
htmd/adaptive/adaptivegoaleg.py
htmd/adaptive/adaptiverun.py
htmd/adaptive/util.py
htmd/apps/__init__.py
htmd/apps/acemd.py
htmd/apps/pmemd.py
htmd/builder/__init__.py
htmd/builder/amber.py
htmd/builder/builder.py
htmd/builder/charmm.py
htmd/builder/ionize.py
htmd/builder/loopmodeler.py
htmd/builder/preparation.py
htmd/builder/solvate.py
htmd/clustering/__init__.py
htmd/clustering/kcenters.py
htmd/clustering/regular.py
htmd/mdengine/__init__.py
htmd/mdengine/acemd/__init__.py
htmd/mdengine/acemd/acemd.py
htmd/membranebuilder/__init__.py
htmd/membranebuilder/build_membrane.py
htmd/membranebuilder/globalminimization.py
htmd/membranebuilder/ljfluid.py
htmd/membranebuilder/pdbreporter.py
htmd/membranebuilder/ringpenetration.py
htmd/membranebuilder/simulate_openmm.py
htmd/molecule/__init__.py
htmd/molecule/molecule.py
htmd/molecule/util.py
htmd/projections/__init__.py
htmd/projections/gwpca.py
htmd/projections/kmeanstri.py
htmd/projections/metric.py
htmd/projections/metriccoordinate.py
htmd/projections/metricdihedral.py
htmd/projections/metricdistance.py
htmd/projections/metricfluctuation.py
htmd/projections/metricplumed2.py
htmd/projections/metricrmsd.py
htmd/projections/metricsasa.py
htmd/projections/metricsecondarystructure.py
htmd/projections/metricshell.py
htmd/projections/metricsphericalcoordinate.py
htmd/projections/metrictmscore.py
htmd/projections/tica.py
htmd/protocols/__init__.py
htmd/protocols/equilibration_v1.py
htmd/protocols/equilibration_v2.py
htmd/protocols/equilibration_v3.py
htmd/protocols/oldprotocolinterface.py
htmd/protocols/pmemdequilibration.py
htmd/protocols/pmemdproduction.py
htmd/protocols/production_v1.py
htmd/protocols/production_v2.py
htmd/protocols/production_v3.py
htmd/protocols/production_v4.py
htmd/protocols/production_v5.py
htmd/protocols/production_v6.py
htmd/queues/__init__.py
htmd/queues/localqueue.py
htmd/queues/lsfqueue.py
htmd/queues/pbsqueue.py
htmd/queues/playqueue.py
htmd/queues/simqueue.py
htmd/queues/slurmqueue.py
htmd/share/builder/amberfiles/cofactors/ADP.frcmod
htmd/share/builder/amberfiles/cofactors/AMP.frcmod
htmd/share/builder/amberfiles/cofactors/ATP.frcmod
htmd/share/builder/amberfiles/cofactors/FMN.frcmod
htmd/share/builder/amberfiles/cofactors/GDP.frcmod
htmd/share/builder/amberfiles/cofactors/GTP.frcmod
htmd/share/builder/amberfiles/cofactors/HEM.frcmod
htmd/share/builder/amberfiles/cofactors/NAD.frcmod
htmd/share/builder/amberfiles/cofactors/NAI.frcmod
htmd/share/builder/amberfiles/cofactors/NAP.frcmod
htmd/share/builder/amberfiles/cofactors/README.txt
htmd/share/builder/amberfiles/cofactors/cofactors.in
htmd/share/builder/amberfiles/ff-ncaa/004.frcmod
htmd/share/builder/amberfiles/ff-ncaa/03Y.frcmod
htmd/share/builder/amberfiles/ff-ncaa/0A1.frcmod
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htmd/share/builder/amberfiles/ff-ncaa/ESC.frcmod
htmd/share/builder/amberfiles/ff-ncaa/FGL.frcmod
htmd/share/builder/amberfiles/ff-ncaa/GHG.frcmod
htmd/share/builder/amberfiles/ff-ncaa/GME.frcmod
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htmd/share/builder/amberfiles/ff-ncaa/HHK.frcmod
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htmd/share/builder/amberfiles/ff-ncaa/OMX.frcmod
htmd/share/builder/amberfiles/ff-ncaa/ONL.frcmod
htmd/share/builder/amberfiles/ff-ncaa/README.txt
htmd/share/builder/amberfiles/ff-ncaa/TRO.frcmod
htmd/share/builder/amberfiles/ff-ncaa/TY2.frcmod
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htmd/share/builder/amberfiles/ff-ncaa/YCM.frcmod
htmd/share/builder/amberfiles/ff-ncaa/YNM.frcmod
htmd/share/builder/amberfiles/ff-ncaa/ffncaa.in
htmd/share/builder/amberfiles/ff-nucleic-OL15/README.txt
htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.frcmod
htmd/share/builder/amberfiles/ff-nucleic-OL15/ff-nucleic-OL15.lib
htmd/share/builder/amberfiles/ff-nucleic-OL15/leap-ff-nucleic-OL15.in
htmd/share/builder/amberfiles/ff-nucleic-OL15/leap.log
htmd/share/builder/amberfiles/ff-nucleic-OL15/leaprc.ff-nucleic-OL15
htmd/share/builder/amberfiles/ff-ptm/0AF.frcmod
htmd/share/builder/amberfiles/ff-ptm/2MR.frcmod
htmd/share/builder/amberfiles/ff-ptm/4PQ.frcmod
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htmd/share/builder/amberfiles/ff-ptm/CGU.frcmod
htmd/share/builder/amberfiles/ff-ptm/CSO.frcmod
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htmd/share/builder/amberfiles/ff-ptm/CSS.frcmod
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htmd/share/builder/amberfiles/ff-ptm/PTR.frcmod
htmd/share/builder/amberfiles/ff-ptm/README.txt
htmd/share/builder/amberfiles/ff-ptm/SEP.frcmod
htmd/share/builder/amberfiles/ff-ptm/TPO.frcmod
htmd/share/builder/amberfiles/ff-ptm/ffptm.in
htmd/share/builder/charmmfiles/par/par_all22_prot.prm
htmd/share/builder/charmmfiles/par/par_all22star_prot.prm
htmd/share/builder/charmmfiles/par/par_all35_ethers.prm
htmd/share/builder/charmmfiles/par/par_all36_carb.prm
htmd/share/builder/charmmfiles/par/par_all36_cgenff.prm
htmd/share/builder/charmmfiles/par/par_all36_lipid.prm
htmd/share/builder/charmmfiles/par/par_all36_na.prm
htmd/share/builder/charmmfiles/par/par_all36_prot.prm
htmd/share/builder/charmmfiles/par/par_all36m_prot.prm
htmd/share/builder/charmmfiles/par/par_water_ions.prm
htmd/share/builder/charmmfiles/top/top_all22_prot.rtf
htmd/share/builder/charmmfiles/top/top_all22star_prot.rtf
htmd/share/builder/charmmfiles/top/top_all35_ethers.rtf
htmd/share/builder/charmmfiles/top/top_all36_carb.rtf
htmd/share/builder/charmmfiles/top/top_all36_cgenff.rtf
htmd/share/builder/charmmfiles/top/top_all36_lipid.rtf
htmd/share/builder/charmmfiles/top/top_all36_na.rtf
htmd/share/builder/charmmfiles/top/top_all36_prot.rtf
htmd/share/builder/charmmfiles/top/top_water_ions.rtf
htmd/share/mdengine/acemd/config/equilibration.json
htmd/share/mdengine/acemd/config/production.json
htmd/share/membranebuilder/lipids/chl1/chl1.pdb
htmd/share/membranebuilder/lipids/popc/popc.pdb
htmd/share/membranebuilder/lipids/pope/pope.pdb
htmdx/__init__.py
htmdx/cli.py
htmdx/license.py